Intellau_Celistic
5'3 KHHV Mentalcel
-
- Joined
- Aug 26, 2021
- Posts
- 166,467
I'll isolate my grandfather's later.
rs1053951 | 18 | 60,232,674 | A | G | 0.5723 | -0.0066 | 0.0011 | 4.34E-10 | -0.0068 | 0.0011 | 1.07E-10 | 3,037,480 | primary | - |
rs12104029 | 18 | 62,509,211 | C | G | 0.5305 | -0.0082 | 0.0010 | 4.08E-15 | -0.0085 | 0.0011 | 5.02E-16 | 3,037,440 | primary | - |
rs11663822 | 18 | 62,723,912 | A | G | 0.2958 | -0.0057 | 0.0011 | 8.26E-07 | -0.0077 | 0.0012 | 2.56E-11 | 3,037,460 | primary | - |
rs72944005 | 18 | 63,497,191 | T | C | 0.2537 | 0.0085 | 0.0012 | 1.61E-12 | 0.0098 | 0.0012 | 5.51E-16 | 3,037,440 | primary | - |
rs62087667 | 18 | 63,798,369 | T | G | 0.2897 | -0.0064 | 0.0012 | 2.49E-08 | -0.0068 | 0.0012 | 4.89E-09 | 3,037,460 | primary | - |
rs12956778 | 18 | 64,567,975 | T | G | 0.6522 | -0.0064 | 0.0011 | 7.28E-09 | -0.0062 | 0.0011 | 1.66E-08 | 3,037,490 | primary | - |
rs8095834 | 18 | 65,025,641 | C | G | 0.0359 | -0.0137 | 0.0028 | 1.23E-06 | -0.0164 | 0.0028 | 7.12E-09 | 3,009,500 | primary | - |
rs623200 | 18 | 66,246,646 | T | C | 0.3849 | 0.0070 | 0.0011 | 5.79E-11 | 0.0068 | 0.0011 | 2.98E-10 | 3,037,450 | primary | - |
rs17842596 | 18 | 67,565,579 | A | G | 0.6080 | 0.0053 | 0.0011 | 8.51E-07 | 0.0067 | 0.0011 | 6.93E-10 | 3,014,590 | primary | - |
rs11874177 | 18 | 70,614,375 | T | G | 0.2825 | -0.0067 | 0.0012 | 8.50E-09 | -0.0074 | 0.0012 | 2.47E-10 | 3,033,340 | primary | - |
rs8092046 | 18 | 71,603,473 | T | C | 0.7634 | -0.0066 | 0.0012 | 7.62E-08 | -0.0069 | 0.0012 | 2.41E-08 | 3,035,750 | primary | - |
rs79359979 | 18 | 72,933,869 | T | C | 0.0972 | 0.0082 | 0.0018 | 4.76E-06 | 0.0107 | 0.0018 | 2.95E-09 | 2,920,520 | primary | - |
rs17190980 | 18 | 73,006,280 | T | C | 0.3336 | 0.0084 | 0.0011 | 3.24E-14 | 0.0083 | 0.0011 | 6.78E-14 | 3,036,880 | primary | - |
rs2554835 | 18 | 74,141,190 | A | G | 0.3889 | 0.0054 | 0.0011 | 4.76E-07 | 0.0065 | 0.0011 | 2.36E-09 | 3,019,110 | primary | - |
rs684192 | 18 | 74,622,529 | A | G | 0.6353 | -0.0068 | 0.0011 | 3.85E-10 | -0.0082 | 0.0011 | 5.74E-14 | 3,037,480 | primary | - |
rs4890901 | 18 | 74,846,355 | A | G | 0.6572 | 0.0072 | 0.0011 | 9.25E-11 | 0.0073 | 0.0011 | 4.44E-11 | 3,000,490 | primary | - |
rs11081529 | 18 | 75,902,735 | T | C | 0.7213 | 0.0123 | 0.0012 | 7.10E-26 | 0.0124 | 0.0012 | 4.22E-26 | 3,035,680 | primary | - |
rs7236339 | 18 | 77,579,773 | A | G | 0.2174 | -0.0153 | 0.0013 | 1.57E-33 | -0.0137 | 0.0013 | 6.61E-27 | 3,036,520 | primary | - |
rs62103175 | 18 | 77,622,467 | T | C | 0.1443 | 0.0122 | 0.0015 | 3.07E-16 | 0.0120 | 0.0015 | 1.51E-15 | 3,031,410 | primary | - |
rs56101188 | 19 | 586,745 | T | C | 0.9054 | 0.0103 | 0.0019 | 3.66E-08 | 0.0116 | 0.0019 | 5.16E-10 | 2,787,460 | primary | - |
rs10401329 | 19 | 1,871,699 | A | G | 0.1205 | 0.0109 | 0.0016 | 1.22E-11 | 0.0107 | 0.0016 | 4.24E-11 | 3,011,220 | primary | - |
rs117849041 | 19 | 2,312,903 | T | C | 0.1052 | 0.0116 | 0.0017 | 1.19E-11 | 0.0111 | 0.0017 | 1.09E-10 | 3,004,070 | primary | - |
rs7255693 | 19 | 2,673,094 | A | C | 0.3108 | 0.0063 | 0.0011 | 3.57E-08 | 0.0062 | 0.0011 | 3.93E-08 | 3,014,680 | primary | - |
rs72989297 | 19 | 3,297,164 | T | G | 0.1344 | -0.0101 | 0.0015 | 6.87E-11 | -0.0098 | 0.0016 | 2.21E-10 | 2,992,820 | primary | - |
rs11085020 | 19 | 3,446,107 | T | C | 0.6756 | -0.0057 | 0.0011 | 4.41E-07 | -0.0069 | 0.0011 | 9.01E-10 | 3,031,100 | primary | - |
rs757436 | 19 | 3,826,749 | A | T | 0.4039 | 0.0065 | 0.0011 | 1.49E-09 | 0.0060 | 0.0011 | 1.82E-08 | 3,032,230 | primary | - |
rs117520996 | 19 | 4,410,003 | T | G | 0.0490 | 0.0220 | 0.0025 | 1.47E-18 | 0.0250 | 0.0025 | 3.60E-23 | 2,859,740 | primary | - |
rs10419571 | 19 | 4,499,976 | T | C | 0.6825 | -0.0085 | 0.0011 | 4.68E-14 | -0.0103 | 0.0011 | 1.44E-19 | 3,016,470 | primary | - |
rs10853981 | 19 | 4,965,064 | A | G | 0.3286 | -0.0087 | 0.0011 | 6.64E-15 | -0.0098 | 0.0011 | 2.16E-18 | 3,034,150 | primary | - |
rs10415488 | 19 | 5,246,717 | T | C | 0.6119 | -0.0060 | 0.0011 | 2.40E-08 | -0.0062 | 0.0011 | 8.71E-09 | 3,009,950 | primary | - |
rs892058 | 19 | 6,275,584 | A | G | 0.2059 | 0.0073 | 0.0013 | 1.98E-08 | 0.0077 | 0.0013 | 2.34E-09 | 3,037,450 | primary | - |
rs8104651 | 19 | 9,950,127 | T | C | 0.5576 | -0.0076 | 0.0011 | 4.65E-13 | -0.0083 | 0.0011 | 4.65E-15 | 3,035,730 | primary | - |
rs12972944 | 19 | 12,713,808 | A | G | 0.6840 | 0.0075 | 0.0011 | 3.50E-11 | 0.0070 | 0.0011 | 6.34E-10 | 3,037,440 | primary | - |
rs899223 | 19 | 13,157,151 | C | G | 0.0811 | 0.0133 | 0.0019 | 5.07E-12 | 0.0123 | 0.0020 | 2.93E-10 | 2,995,520 | primary | - |
rs117861106 | 19 | 13,213,801 | T | C | 0.0508 | -0.0187 | 0.0024 | 7.60E-15 | -0.0201 | 0.0024 | 9.07E-17 | 2,988,820 | primary | - |
rs62109939 | 19 | 13,292,263 | T | C | 0.7921 | -0.0092 | 0.0013 | 3.63E-12 | -0.0091 | 0.0013 | 7.24E-12 | 2,872,180 | primary | - |
rs12609965 | 19 | 13,917,866 | A | C | 0.2450 | 0.0071 | 0.0012 | 8.05E-09 | 0.0073 | 0.0012 | 2.10E-09 | 3,000,420 | primary | - |
rs10854143 | 19 | 15,512,720 | T | C | 0.4853 | 0.0066 | 0.0010 | 3.42E-10 | 0.0069 | 0.0011 | 4.28E-11 | 3,027,510 | primary | - |
rs12974657 | 19 | 18,237,571 | T | C | 0.6826 | 0.0092 | 0.0011 | 3.71E-16 | 0.0107 | 0.0011 | 3.59E-21 | 3,031,300 | primary | - |
rs12975407 | 19 | 18,443,650 | T | C | 0.5386 | 0.0055 | 0.0011 | 2.12E-07 | 0.0065 | 0.0011 | 8.27E-10 | 3,015,600 | primary | - |
rs8105994 | 19 | 18,593,553 | T | C | 0.6599 | 0.0058 | 0.0011 | 1.34E-07 | 0.0063 | 0.0011 | 1.49E-08 | 3,037,480 | primary | - |
SNP | Chr | BP | Effect allele | Other allele | Effect allele frequency | Effect size | S.E. | P value | Hetero I2 | Hetero P | N |
rs9837520 | 3 | 49,722,356 | A | G | 0.2821 | 0.0295 | 0.0012 | 2.89E-140 | 30 | 1.55E-02 | 2,990,475 |
rs2624841 | 3 | 50,198,415 | T | C | 0.3383 | -0.0264 | 0.0011 | 2.62E-126 | 20.8 | 6.99E-02 | 3,035,553 |
rs4583487 | 2 | 100,837,126 | T | G | 0.3961 | 0.0230 | 0.0011 | 2.58E-102 | 19.6 | 8.15E-02 | 3,037,499 |
rs9372734 | 6 | 98,577,689 | T | C | 0.4819 | 0.0219 | 0.0010 | 3.15E-97 | 30.5 | 9.87E-03 | 3,036,955 |
rs1334297 | 13 | 58,335,375 | A | G | 0.7407 | 0.0240 | 0.0012 | 8.08E-90 | 0 | 8.97E-01 | 3,036,702 |
rs4557790 | 9 | 23,349,982 | A | C | 0.5537 | 0.0205 | 0.0011 | 4.88E-84 | 15.1 | 1.50E-01 | 3,024,163 |
rs61160187 | 5 | 60,111,579 | A | G | 0.6118 | -0.0196 | 0.0011 | 1.32E-74 | 18.9 | 9.36E-02 | 3,036,158 |
rs10733389 | 9 | 23,378,220 | A | G | 0.3804 | -0.0194 | 0.0011 | 4.34E-72 | 0 | 8.34E-01 | 3,022,450 |
rs60814418 | 17 | 43,850,645 | T | C | 0.2242 | -0.0226 | 0.0013 | 5.23E-72 | 43.5 | 3.01E-04 | 3,007,427 |
rs34305371 | 1 | 72,733,610 | A | G | 0.0993 | 0.0314 | 0.0018 | 1.77E-71 | 20.3 | 8.32E-02 | 3,007,760 |
rs12089815 | 1 | 91,189,933 | A | G | 0.5396 | 0.0185 | 0.0011 | 1.14E-69 | 2.7 | 4.15E-01 | 3,035,786 |
rs12709690 | 18 | 35,165,852 | T | C | 0.3548 | -0.0186 | 0.0011 | 9.28E-65 | 22 | 5.58E-02 | 3,037,499 |
rs11664320 | 18 | 50,872,623 | T | C | 0.5649 | 0.0176 | 0.0011 | 2.21E-62 | 4.2 | 3.76E-01 | 3,037,499 |
rs9787076 | 1 | 44,141,149 | A | C | 0.6711 | -0.0184 | 0.0011 | 3.47E-61 | 0 | 9.65E-01 | 3,037,499 |
rs370558872 | 17 | 44,086,726 | T | C | 0.7764 | 0.0233 | 0.0015 | 4.03E-58 | 0 | 1.00E+00 | 2,272,216 |
rs13135092 | 4 | 103,198,082 | A | G | 0.9129 | 0.0299 | 0.0019 | 4.44E-58 | 8.6 | 2.82E-01 | 3,019,216 |
rs3747631 | 1 | 204,587,569 | C | G | 0.2148 | 0.0204 | 0.0013 | 7.17E-58 | 2.7 | 4.13E-01 | 3,037,499 |
rs35761247 | 3 | 48,623,124 | A | G | 0.055 | 0.0361 | 0.0023 | 3.65E-55 | 7.2 | 3.24E-01 | 2,999,477 |
rs1689510 | 12 | 56,396,768 | C | G | 0.3272 | 0.0174 | 0.0011 | 3.98E-55 | 13.1 | 1.82E-01 | 3,037,499 |
rs62244884 | 3 | 71,583,383 | A | G | 0.4275 | 0.0165 | 0.0011 | 4.03E-55 | 5.1 | 3.58E-01 | 3,035,242 |
rs1455350 | 2 | 199,497,115 | A | T | 0.4866 | -0.0161 | 0.0010 | 2.76E-53 | 1.4 | 4.45E-01 | 3,033,958 |
rs34316 | 5 | 88,015,545 | A | C | 0.4285 | 0.0163 | 0.0011 | 6.58E-53 | 32.1 | 6.72E-03 | 3,000,071 |
rs11581447 | 1 | 72,829,683 | A | C | 0.1989 | -0.0196 | 0.0013 | 9.07E-51 | 2.7 | 4.14E-01 | 3,037,499 |
rs11774212 | 8 | 145,686,505 | T | C | 0.5107 | 0.0157 | 0.0010 | 1.70E-50 | 4.4 | 3.76E-01 | 3,027,053 |
rs2884364 | 2 | 161,977,647 | A | G | 0.3818 | -0.0159 | 0.0011 | 1.29E-49 | 0 | 6.55E-01 | 3,037,499 |
rs11191193 | 10 | 103,802,408 | A | G | 0.6552 | 0.0163 | 0.0011 | 1.42E-49 | 0 | 8.55E-01 | 3,036,702 |
rs12897763 | 14 | 29,638,938 | A | G | 0.1911 | 0.0197 | 0.0013 | 1.73E-49 | 0 | 5.29E-01 | 3,037,499 |
rs12464505 | 2 | 100,876,693 | A | C | 0.8034 | 0.0194 | 0.0013 | 3.31E-49 | 13.3 | 1.78E-01 | 3,037,499 |
rs75577466 | 5 | 60,605,507 | C | G | 0.1703 | -0.0204 | 0.0014 | 1.95E-48 | 0 | 5.06E-01 | 3,034,989 |
European | Sub | 11160 | C=0.84149 | G=0.00000, T=0.15851 |
African | Sub | 2050 | C=0.9888 | G=0.0000, T=0.0112 |
African Others | Sub | 92 | C=0.99 | G=0.00, T=0.01 |
African American | Sub | 1958 | C=0.9888 | G=0.0000, T=0.0112 |
Asian | Sub | 10 | C=0.6 | G=0.0, T=0.4 |
East Asian | Sub | 8 | C=0.8 | G=0.0, T=0.2 |
1000Genomes_30x | Global | Study-wide | 6404 | C=0.6341 | T=0.3659 |
1000Genomes_30x | African | Sub | 1786 | C=0.8141 | T=0.1859 |
1000Genomes_30x | Europe | Sub | 1266 | C=0.7520 | T=0.2480 |
1000Genomes_30x | South Asian | Sub | 1202 | C=0.5857 | T=0.4143 |
1000Genomes_30x | East Asian | Sub | 1170 | C=0.3026 | T=0.6974 |
1000Genomes_30x | American | Sub | 980 | C=0.609 | T=0.391 |